SNP Profiles of LCT EEN 90 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	CC	GG	CC	AA	GG	GG	CC	TT	AA	GG	GG	GG	AA
1._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
2._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
3._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
4._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
5._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
6._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
7._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
8._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
9._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
10._GC-08-089-2-12	AC	CC	GG	CC	TT	CC	GG	GG	TT	TT	GG	CC	CC	TT
11._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
12._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
13._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
14._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
15._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
16._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
17._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
18._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
19._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
20._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
21._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
22._LCT_EEN_90	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	GG	GG	GG	CC	AA	GG	GG	CC	AA	GG
1._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
2._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
3._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
4._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
5._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
6._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
7._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
8._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
9._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
10._GC-08-089-2-12	TT	GG	TT	_	GG	CC	CC	CC	TT	CC	GG	GG	TT	CC
11._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
12._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
13._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
14._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
15._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
16._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
17._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
18._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
19._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
20._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
21._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC
22._LCT_EEN_90	_	GG	TT	_	_	CC	_	CC	TT	CC	GG	GG	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	CC	CC	AA	GG	GG	CC	CC	AA	AA	AG	GG	TT
1._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
2._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
3._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
4._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
5._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
6._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
7._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
8._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
9._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
10._GC-08-089-2-12	AA	GG	CC	GG	AA	GG	CC	CC	GG	TT	AA	AG	GG	TT
11._LCT_EEN_90	_	_	CC	_	AA	_	CC	CC	_	_	AA	_	_	TT
12._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
13._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
14._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
15._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
16._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
17._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
18._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
19._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
20._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
21._LCT_EEN_90	_	_	CC	GG	AA	_	CC	CC	_	_	AA	_	_	TT
22._LCT_EEN_90	_	_	CC	-	AA	_	CC	CC	_	_	AA	_	_	TT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	AA	AA	AA	AA	GG	GG	AA	AC	AA	CC	GG	GG	CC
1._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
2._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
3._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
4._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
5._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
6._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
7._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
8._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
9._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
10._GC-08-089-2-12	CC	AA	AA	AA	AA	CC	_	AA	AC	AA	GG	GG	GG	CC
11._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
12._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
13._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
14._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
15._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
16._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
17._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
18._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
19._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
20._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
21._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC
22._LCT_EEN_90	_	_	_	AA	_	_	_	_	AC	_	GG	_	GG	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG	AA
1._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
2._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
3._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
4._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
5._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
6._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
7._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
8._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
9._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
10._GC-08-089-2-12	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC	AA
11._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
12._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
13._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
14._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
15._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
16._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
17._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
18._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
19._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
20._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
21._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	_	_
22._LCT_EEN_90	_	_	CT	_	_	GG	_	_	_	_	_	_	CC	_

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X	X_X
1._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
2._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
3._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
4._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
5._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
6._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
7._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
8._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
9._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
10._GC-08-089-2-12	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X
11._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
12._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
13._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
14._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
15._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
16._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
17._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
18._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
19._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
20._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
21._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X
22._LCT_EEN_90	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X	X_X

Input profile: LCT_EEN_90 GC-08-89-2-12

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership/ CW

1._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

2._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

4._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

9._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._LCT_EEN_90 GC-08-089-2-12

49.4 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._LCT_EEN_90

48.5 %
33 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2016

12._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 3 > FP

Dapeng Zhang, 2016

13._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 6

Dapeng Zhang, 2016

15._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 7

Dapeng Zhang, 2016

16._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 8

Dapeng Zhang, 2016

17._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 9

Dapeng Zhang, 2016

18._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 10

Dapeng Zhang, 2016

19._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 1 > FP

Dapeng Zhang, 2016

20._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 2 > FP

Dapeng Zhang, 2016

21._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8212 4 > FP

Dapeng Zhang, 2016

22._LCT_EEN_90

47.1 %
34 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 143 T3

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998